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News Link • Biology, Botany and Zoology

Beyond base pairs: Regulatory sequences of mouse genome sequenced for first time

•, byUniversity of California

In a paper published in the July 1, 2012 issue of the journal Nature, researchers at the Ludwig Institute for and the University of California, San Diego School of Medicine open the book further, mapping for the first time a significant portion of the functional sequences of the , the most widely used mammalian in biomedical research.

"We've known the precise alphabet of the for more than a decade, but not necessarily how those letters make meaningful words, paragraphs or life," said Bing Ren, PhD, head of the Laboratory of Gene Regulation at the Ludwig Institute for Cancer Research at UC San Diego. "We know, for example, that only one to two percent of the functional genome codes for proteins, but that there are highly conserved regions in the genome outside of protein-coding that affect genes and disease development. It's clear these regions do something or they would have changed or disappeared."

Chief among those regions are cis-regulatory elements, key stretches of DNA that appear to regulate the transcription of genes. Misregulation of genes can result in diseases like cancer. Using high-throughput sequencing technologies, Ren and colleagues mapped nearly 300,000 mouse cis-regulatory elements in 19 different types of tissue and cell.

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